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The plot of Heroes is designed to be told in a way similar to the way comic books are told. Each season of Heroes contains one or two "volumes". There are several main story lines in each volume. As the main plots develop, smaller, more intimate stories are told within them. Each main character's story is developed separately and as time passes their paths cross and it is explained how their stories are intertwined and connected. This is the story of ordinary people who discover extraordinary super powers after a solar eclipse reveals them, and how these abilities affect the characters' daily lives.

The first season, known as "Volume One: Genesis", begins with a seemingly ordinary group of people who gradually become aware that they have special abilities. The story develops showing their reactions to those powers, and how that discovery affects their personal and professional lives. At the same time, several ordinary individuals are investigating the origins and extent of those abilities. Mohinder Suresh (Sendhil Ramamurthy), a research geneticist, continues his late father's research into the biological source of the powers, while Noah Bennet (Jack Coleman) represents, and is a lead agent for, a secret organization known only as "the Company" that wants to control, and if necessary, terminate those who are gifted. After only having a short time to come to terms with their new abilities, each of the heroes is drawn into the final showdown. They must each do their part to stop the destruction of the world that starts with an impending explosion at Kirby Plaza in New York City.